Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 AC134698.3-201ENST00000523880 214 ntBASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 AC138951.2-201ENST00000623455 1161 ntBASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC1BQ8NDV3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 AC006480.2-201ENST00000609770 1337 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 AC093525.9-201ENST00000624961 1746 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 KRT8P39-201ENST00000396270 1433 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 EEF1DP6-201ENST00000449232 372 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 COX5BP1-201ENST00000507622 393 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 PRKXP1-201ENST00000561423 1122 ntBASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC1BQ8NDV3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 CYP4F24P-201ENST00000586049 1580 ntBASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC1BQ8NDV3 AC022137.2-201ENST00000503482 481 ntBASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms