Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 SERBP1P5-201ENST00000510079 1181 ntBASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 AC104640.1-201ENST00000562617 2109 ntBASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 AL590560.3-201ENST00000623350 461 ntBASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 AC073592.8-201ENST00000624126 511 ntBASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 AC100757.3-201ENST00000622361 1406 ntBASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC144BQ3MJ40 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 KRT18P34-201ENST00000488218 1270 ntBASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AP005018.1-201ENST00000525475 301 ntBASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 AC003101.2-201ENST00000612557 442 ntBASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 ME2P1-201ENST00000426028 1970 ntBASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC144BQ3MJ40 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 TSSK5P-201ENST00000423978 907 ntBASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 CRB3P1-201ENST00000449338 276 ntBASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 GAPDHP21-201ENST00000450301 1010 ntBASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 AC073389.1-201ENST00000595595 795 ntBASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC144BQ3MJ40 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC144BQ3MJ40 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms