Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD3O95983 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD3O95983 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD3O95983 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD3O95983 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD3O95983 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
MBD3O95983 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
MBD3O95983 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 AL031133.1-201ENST00000406807 723 ntBASIC18.62■□□□□ 0.57
MBD3O95983 AC245100.5-201ENST00000452108 331 ntBASIC18.62■□□□□ 0.57
MBD3O95983 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
MBD3O95983 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MBD3O95983 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD3O95983 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 AC112693.3-201ENST00000624819 1983 ntBASIC18.61■□□□□ 0.57
MBD3O95983 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 RBM17P3-201ENST00000417687 1192 ntBASIC18.61■□□□□ 0.57
MBD3O95983 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 AC026396.1-201ENST00000419388 421 ntBASIC18.61■□□□□ 0.57
MBD3O95983 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.61■□□□□ 0.57
MBD3O95983 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD3O95983 AC132008.2-207ENST00000454517 770 ntBASIC18.61■□□□□ 0.57
MBD3O95983 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.61■□□□□ 0.57
MBD3O95983 AP000867.3-201ENST00000524675 377 ntBASIC18.61■□□□□ 0.57
MBD3O95983 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.61■□□□□ 0.57
MBD3O95983 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD3O95983 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
MBD3O95983 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.61■□□□□ 0.57
MBD3O95983 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 CICP23-201ENST00000605013 2741 ntBASIC18.61■□□□□ 0.57
MBD3O95983 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD3O95983 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD3O95983 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MBD3O95983 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD3O95983 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD3O95983 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD3O95983 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms