Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 AL512638.1-201ENST00000457493 794 ntBASIC18.11■□□□□ 0.49
MSH4O15457 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.11■□□□□ 0.49
MSH4O15457 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH4O15457 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH4O15457 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.11■□□□□ 0.49
MSH4O15457 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
MSH4O15457 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH4O15457 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MSH4O15457 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MSH4O15457 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH4O15457 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 AC022144.1-201ENST00000602255 1580 ntBASIC18.1■□□□□ 0.49
MSH4O15457 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.1■□□□□ 0.49
MSH4O15457 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH4O15457 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
MSH4O15457 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH4O15457 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH4O15457 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH4O15457 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH4O15457 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.09■□□□□ 0.49
MSH4O15457 AC069224.1-201ENST00000566372 1715 ntBASIC18.09■□□□□ 0.49
MSH4O15457 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH4O15457 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH4O15457 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 MIR661-201ENST00000384842 89 ntBASIC18.09■□□□□ 0.49
MSH4O15457 FO393414.2-201ENST00000405153 598 ntBASIC18.09■□□□□ 0.49
MSH4O15457 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH4O15457 AZGP1P1-201ENST00000411909 902 ntBASIC18.09■□□□□ 0.49
MSH4O15457 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.09■□□□□ 0.49
MSH4O15457 SERBP1P3-201ENST00000459980 809 ntBASIC18.09■□□□□ 0.49
MSH4O15457 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 RN7SL618P-201ENST00000477850 296 ntBASIC18.09■□□□□ 0.49
MSH4O15457 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MSH4O15457 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH4O15457 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH4O15457 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
MSH4O15457 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms