Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SSX3Q99909 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX3Q99909 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
SSX3Q99909 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX3Q99909 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SSX3Q99909 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX3Q99909 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX3Q99909 BHLHE23-202ENST00000612929 1109 ntBASIC19.56■□□□□ 0.72
SSX3Q99909 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX3Q99909 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
SSX3Q99909 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.55■□□□□ 0.72
SSX3Q99909 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX3Q99909 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.54■□□□□ 0.72
SSX3Q99909 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SSX3Q99909 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX3Q99909 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
SSX3Q99909 AC139795.1-202ENST00000500444 432 ntBASIC19.53■□□□□ 0.72
SSX3Q99909 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.53■□□□□ 0.72
SSX3Q99909 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.53■□□□□ 0.72
SSX3Q99909 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX3Q99909 AC145676.1-201ENST00000514988 2004 ntBASIC19.52■□□□□ 0.72
SSX3Q99909 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX3Q99909 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
SSX3Q99909 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SSX3Q99909 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SSX3Q99909 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX3Q99909 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.52■□□□□ 0.72
SSX3Q99909 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
SSX3Q99909 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.52■□□□□ 0.72
SSX3Q99909 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SSX3Q99909 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.51■□□□□ 0.71
SSX3Q99909 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.51■□□□□ 0.71
SSX3Q99909 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SSX3Q99909 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SSX3Q99909 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX3Q99909 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.51■□□□□ 0.71
SSX3Q99909 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX3Q99909 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SSX3Q99909 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX3Q99909 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX3Q99909 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
SSX3Q99909 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.49■□□□□ 0.71
SSX3Q99909 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.49■□□□□ 0.71
SSX3Q99909 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX3Q99909 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SSX3Q99909 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.48■□□□□ 0.71
SSX3Q99909 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.48■□□□□ 0.71
SSX3Q99909 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX3Q99909 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.48■□□□□ 0.71
SSX3Q99909 AC074183.2-201ENST00000623112 922 ntBASIC19.48■□□□□ 0.71
SSX3Q99909 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX3Q99909 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.48■□□□□ 0.71
SSX3Q99909 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX3Q99909 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SSX3Q99909 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.47■□□□□ 0.71
SSX3Q99909 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.47■□□□□ 0.71
SSX3Q99909 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SSX3Q99909 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SSX3Q99909 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SSX3Q99909 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.47■□□□□ 0.71
SSX3Q99909 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SSX3Q99909 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX3Q99909 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms