Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LYSMD1Q96S90 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
LYSMD1Q96S90 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LYSMD1Q96S90 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LYSMD1Q96S90 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LYSMD1Q96S90 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.6■■□□□ 1.37
LYSMD1Q96S90 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
LYSMD1Q96S90 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 YBX1P4-201ENST00000392794 808 ntBASIC23.59■■□□□ 1.37
LYSMD1Q96S90 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LYSMD1Q96S90 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
LYSMD1Q96S90 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
LYSMD1Q96S90 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
LYSMD1Q96S90 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 RARRES2P1-201ENST00000474487 481 ntBASIC23.57■■□□□ 1.36
LYSMD1Q96S90 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 KRT8P33-201ENST00000508125 1423 ntBASIC23.57■■□□□ 1.36
LYSMD1Q96S90 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.57■■□□□ 1.36
LYSMD1Q96S90 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.56■■□□□ 1.36
LYSMD1Q96S90 KRT18P24-201ENST00000344739 1156 ntBASIC23.56■■□□□ 1.36
LYSMD1Q96S90 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.56■■□□□ 1.36
LYSMD1Q96S90 AC011551.1-201ENST00000614101 683 ntBASIC23.56■■□□□ 1.36
LYSMD1Q96S90 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LYSMD1Q96S90 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.56■■□□□ 1.36
LYSMD1Q96S90 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LYSMD1Q96S90 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 AC103724.3-201ENST00000564481 992 ntBASIC23.55■■□□□ 1.36
LYSMD1Q96S90 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 MIR6089-201ENST00000616698 64 ntBASIC23.55■■□□□ 1.36
LYSMD1Q96S90 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 AC020928.2-201ENST00000588717 2197 ntBASIC23.55■■□□□ 1.36
LYSMD1Q96S90 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LYSMD1Q96S90 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LYSMD1Q96S90 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LYSMD1Q96S90 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.52■■□□□ 1.36
LYSMD1Q96S90 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LYSMD1Q96S90 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LYSMD1Q96S90 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 AC090877.2-201ENST00000558441 1738 ntBASIC23.51■■□□□ 1.35
LYSMD1Q96S90 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 AC120024.1-201ENST00000562672 995 ntBASIC23.51■■□□□ 1.35
LYSMD1Q96S90 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms