Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS13AQ96RL7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS13AQ96RL7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13AQ96RL7 ESRRAP2-201ENST00000418437 1549 ntBASIC23.78■■□□□ 1.4
VPS13AQ96RL7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS13AQ96RL7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS13AQ96RL7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS13AQ96RL7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS13AQ96RL7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
VPS13AQ96RL7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS13AQ96RL7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS13AQ96RL7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS13AQ96RL7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.77■■□□□ 1.4
VPS13AQ96RL7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
VPS13AQ96RL7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
VPS13AQ96RL7 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
VPS13AQ96RL7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS13AQ96RL7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS13AQ96RL7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.76■■□□□ 1.39
VPS13AQ96RL7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
VPS13AQ96RL7 AF213884.3-201ENST00000563833 479 ntBASIC23.76■■□□□ 1.39
VPS13AQ96RL7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS13AQ96RL7 AL136162.1-201ENST00000607711 1078 ntBASIC23.75■■□□□ 1.39
VPS13AQ96RL7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 AC011551.1-201ENST00000614101 683 ntBASIC23.74■■□□□ 1.39
VPS13AQ96RL7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 IKBKGP1-201ENST00000612193 1073 ntBASIC23.74■■□□□ 1.39
VPS13AQ96RL7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13AQ96RL7 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS13AQ96RL7 AC091305.1-201ENST00000479476 895 ntBASIC23.73■■□□□ 1.39
VPS13AQ96RL7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS13AQ96RL7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS13AQ96RL7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS13AQ96RL7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
VPS13AQ96RL7 ID1-201ENST00000376105 1233 ntBASIC23.72■■□□□ 1.39
VPS13AQ96RL7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
VPS13AQ96RL7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS13AQ96RL7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS13AQ96RL7 AC022517.1-201ENST00000592429 346 ntBASIC23.71■■□□□ 1.39
VPS13AQ96RL7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS13AQ96RL7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS13AQ96RL7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS13AQ96RL7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS13AQ96RL7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS13AQ96RL7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS13AQ96RL7 AC092437.1-201ENST00000624794 1048 ntBASIC23.69■■□□□ 1.38
VPS13AQ96RL7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
VPS13AQ96RL7 RASA4CP-201ENST00000424092 1398 ntBASIC23.68■■□□□ 1.38
VPS13AQ96RL7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
VPS13AQ96RL7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.68■■□□□ 1.38
VPS13AQ96RL7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.68■■□□□ 1.38
VPS13AQ96RL7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VPS13AQ96RL7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
VPS13AQ96RL7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
VPS13AQ96RL7 KRT18P10-201ENST00000388836 1287 ntBASIC23.65■■□□□ 1.38
VPS13AQ96RL7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.65■■□□□ 1.38
VPS13AQ96RL7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.64■■□□□ 1.38
VPS13AQ96RL7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.64■■□□□ 1.38
VPS13AQ96RL7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.64■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms