Protein–RNA interactions for Protein: Q92890

UFD1, Ubiquitin recognition factor in ER-associated degradation protein 1, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1Q92890 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UFD1Q92890 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
UFD1Q92890 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UFD1Q92890 AC004812.2-201ENST00000611079 2094 ntBASIC20.96■□□□□ 0.95
UFD1Q92890 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.96■□□□□ 0.95
UFD1Q92890 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.95■□□□□ 0.94
UFD1Q92890 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.95■□□□□ 0.94
UFD1Q92890 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
UFD1Q92890 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.95■□□□□ 0.94
UFD1Q92890 AC008813.1-201ENST00000536597 885 ntBASIC20.95■□□□□ 0.94
UFD1Q92890 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
UFD1Q92890 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UFD1Q92890 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
UFD1Q92890 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
UFD1Q92890 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.94■□□□□ 0.94
UFD1Q92890 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
UFD1Q92890 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UFD1Q92890 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UFD1Q92890 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
UFD1Q92890 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.93■□□□□ 0.94
UFD1Q92890 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.93■□□□□ 0.94
UFD1Q92890 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UFD1Q92890 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
UFD1Q92890 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
UFD1Q92890 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.92■□□□□ 0.94
UFD1Q92890 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.92■□□□□ 0.94
UFD1Q92890 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.92■□□□□ 0.94
UFD1Q92890 DUX4L29-201ENST00000425409 679 ntBASIC20.92■□□□□ 0.94
UFD1Q92890 AC148477.6-201ENST00000623746 465 ntBASIC20.92■□□□□ 0.94
UFD1Q92890 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UFD1Q92890 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UFD1Q92890 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
UFD1Q92890 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UFD1Q92890 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UFD1Q92890 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
UFD1Q92890 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.9■□□□□ 0.94
UFD1Q92890 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.9■□□□□ 0.94
UFD1Q92890 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UFD1Q92890 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UFD1Q92890 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UFD1Q92890 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
UFD1Q92890 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UFD1Q92890 ABCB10P4-201ENST00000566803 2184 ntBASIC20.89■□□□□ 0.94
UFD1Q92890 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UFD1Q92890 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
UFD1Q92890 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.89■□□□□ 0.93
UFD1Q92890 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UFD1Q92890 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UFD1Q92890 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UFD1Q92890 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.88■□□□□ 0.93
UFD1Q92890 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.88■□□□□ 0.93
UFD1Q92890 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
UFD1Q92890 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UFD1Q92890 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UFD1Q92890 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
UFD1Q92890 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.87■□□□□ 0.93
UFD1Q92890 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.87■□□□□ 0.93
UFD1Q92890 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
UFD1Q92890 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UFD1Q92890 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UFD1Q92890 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UFD1Q92890 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.87■□□□□ 0.93
UFD1Q92890 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.86■□□□□ 0.93
UFD1Q92890 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.86■□□□□ 0.93
UFD1Q92890 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
UFD1Q92890 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UFD1Q92890 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.86■□□□□ 0.93
UFD1Q92890 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms