Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CSPG4Q6UVK1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CSPG4Q6UVK1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 PBX2P1-201ENST00000493219 1291 ntBASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CSPG4Q6UVK1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.64■□□□□ 0.73
CSPG4Q6UVK1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.64■□□□□ 0.73
CSPG4Q6UVK1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CSPG4Q6UVK1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CSPG4Q6UVK1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CSPG4Q6UVK1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CSPG4Q6UVK1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.63■□□□□ 0.73
CSPG4Q6UVK1 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.62■□□□□ 0.73
CSPG4Q6UVK1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.61■□□□□ 0.73
CSPG4Q6UVK1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CSPG4Q6UVK1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 AF213884.3-201ENST00000563833 479 ntBASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 EDA-201ENST00000338901 1233 ntBASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 AC011551.1-201ENST00000614101 683 ntBASIC19.59■□□□□ 0.73
CSPG4Q6UVK1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 AL162430.1-201ENST00000480705 870 ntBASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSPG4Q6UVK1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSPG4Q6UVK1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.58■□□□□ 0.72
CSPG4Q6UVK1 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.58■□□□□ 0.72
CSPG4Q6UVK1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.58■□□□□ 0.72
CSPG4Q6UVK1 AF131216.4-201ENST00000638924 1588 ntBASIC19.58■□□□□ 0.72
CSPG4Q6UVK1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.57■□□□□ 0.72
CSPG4Q6UVK1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSPG4Q6UVK1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSPG4Q6UVK1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.57■□□□□ 0.72
CSPG4Q6UVK1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CSPG4Q6UVK1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 AC024257.2-201ENST00000549699 147 ntBASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSPG4Q6UVK1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CSPG4Q6UVK1 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.55■□□□□ 0.72
CSPG4Q6UVK1 AL355001.2-201ENST00000620617 1191 ntBASIC19.55■□□□□ 0.72
CSPG4Q6UVK1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.55■□□□□ 0.72
CSPG4Q6UVK1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.55■□□□□ 0.72
CSPG4Q6UVK1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CSPG4Q6UVK1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CSPG4Q6UVK1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CSPG4Q6UVK1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CSPG4Q6UVK1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC19.54■□□□□ 0.72
CSPG4Q6UVK1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms