Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.61■■□□□ 1.05
RPUSD3Q6P087 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RPUSD3Q6P087 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.6■■□□□ 1.05
RPUSD3Q6P087 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RPUSD3Q6P087 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
RPUSD3Q6P087 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
RPUSD3Q6P087 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RPUSD3Q6P087 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPUSD3Q6P087 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.58■■□□□ 1.05
RPUSD3Q6P087 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
RPUSD3Q6P087 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RPUSD3Q6P087 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPUSD3Q6P087 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RPUSD3Q6P087 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
RPUSD3Q6P087 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 AC010997.5-201ENST00000609182 354 ntBASIC21.56■■□□□ 1.04
RPUSD3Q6P087 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPUSD3Q6P087 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPUSD3Q6P087 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.55■■□□□ 1.04
RPUSD3Q6P087 MIR6724-1-201ENST00000616420 92 ntBASIC21.55■■□□□ 1.04
RPUSD3Q6P087 MIR6724-2-201ENST00000616483 92 ntBASIC21.55■■□□□ 1.04
RPUSD3Q6P087 MIR6724-4-201ENST00000617390 92 ntBASIC21.55■■□□□ 1.04
RPUSD3Q6P087 MIR6724-3-201ENST00000622482 92 ntBASIC21.55■■□□□ 1.04
RPUSD3Q6P087 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.55■■□□□ 1.04
RPUSD3Q6P087 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.54■■□□□ 1.04
RPUSD3Q6P087 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 MTDHP2-201ENST00000601468 714 ntBASIC21.53■■□□□ 1.04
RPUSD3Q6P087 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPUSD3Q6P087 AC135731.1-201ENST00000569415 2548 ntBASIC21.53■■□□□ 1.04
RPUSD3Q6P087 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 AC131281.2-201ENST00000520478 145 ntBASIC21.52■■□□□ 1.04
RPUSD3Q6P087 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 MIR3621-201ENST00000580529 85 ntBASIC21.52■■□□□ 1.04
RPUSD3Q6P087 AL117332.1-201ENST00000622628 974 ntBASIC21.52■■□□□ 1.04
RPUSD3Q6P087 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.52■■□□□ 1.04
RPUSD3Q6P087 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
RPUSD3Q6P087 AL139246.5-201ENST00000606645 996 ntBASIC21.51■■□□□ 1.03
RPUSD3Q6P087 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.51■■□□□ 1.03
RPUSD3Q6P087 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPUSD3Q6P087 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPUSD3Q6P087 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPUSD3Q6P087 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPUSD3Q6P087 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPUSD3Q6P087 MIR638-201ENST00000385237 100 ntBASIC21.49■■□□□ 1.03
RPUSD3Q6P087 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms