Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 AL031432.3-201ENST00000607698 485 ntBASIC29.4■■■□□ 2.3
CCDC88AQ3V6T2 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CCDC88AQ3V6T2 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.39■■■□□ 2.3
CCDC88AQ3V6T2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC29.39■■■□□ 2.3
CCDC88AQ3V6T2 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
CCDC88AQ3V6T2 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC29.39■■■□□ 2.29
CCDC88AQ3V6T2 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC88AQ3V6T2 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.37■■■□□ 2.29
CCDC88AQ3V6T2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CCDC88AQ3V6T2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 AC142381.2-201ENST00000566120 298 ntBASIC29.36■■■□□ 2.29
CCDC88AQ3V6T2 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC29.35■■■□□ 2.29
CCDC88AQ3V6T2 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.35■■■□□ 2.29
CCDC88AQ3V6T2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
CCDC88AQ3V6T2 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.33■■■□□ 2.29
CCDC88AQ3V6T2 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC29.33■■■□□ 2.29
CCDC88AQ3V6T2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
CCDC88AQ3V6T2 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
CCDC88AQ3V6T2 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
CCDC88AQ3V6T2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC29.32■■■□□ 2.28
CCDC88AQ3V6T2 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CCDC88AQ3V6T2 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
CCDC88AQ3V6T2 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CCDC88AQ3V6T2 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
CCDC88AQ3V6T2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC29.31■■■□□ 2.28
CCDC88AQ3V6T2 TFPT-201ENST00000391757 774 ntTSL 5 BASIC29.3■■■□□ 2.28
CCDC88AQ3V6T2 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
CCDC88AQ3V6T2 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
CCDC88AQ3V6T2 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
CCDC88AQ3V6T2 PBX2P1-201ENST00000493219 1291 ntBASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 AC011551.1-201ENST00000614101 683 ntBASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC88AQ3V6T2 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC29.28■■■□□ 2.28
CCDC88AQ3V6T2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC88AQ3V6T2 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC88AQ3V6T2 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 MIR5787-201ENST00000611784 55 ntBASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.27■■■□□ 2.28
CCDC88AQ3V6T2 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
CCDC88AQ3V6T2 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC88AQ3V6T2 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC29.26■■■□□ 2.27
CCDC88AQ3V6T2 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC88AQ3V6T2 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 AP004609.3-201ENST00000610705 1884 ntBASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC88AQ3V6T2 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC88AQ3V6T2 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.24■■■□□ 2.27
CCDC88AQ3V6T2 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC29.23■■■□□ 2.27
CCDC88AQ3V6T2 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.22■■■□□ 2.27
CCDC88AQ3V6T2 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms