Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC27.38■■□□□ 1.97
CCDC144BQ3MJ40 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC144BQ3MJ40 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
CCDC144BQ3MJ40 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.37■■□□□ 1.97
CCDC144BQ3MJ40 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC144BQ3MJ40 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC144BQ3MJ40 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 Z92544.1-202ENST00000571933 1220 ntBASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
CCDC144BQ3MJ40 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC144BQ3MJ40 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC144BQ3MJ40 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.35■■□□□ 1.97
CCDC144BQ3MJ40 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.35■■□□□ 1.97
CCDC144BQ3MJ40 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.34■■□□□ 1.97
CCDC144BQ3MJ40 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.34■■□□□ 1.97
CCDC144BQ3MJ40 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC144BQ3MJ40 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
CCDC144BQ3MJ40 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC144BQ3MJ40 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.33■■□□□ 1.97
CCDC144BQ3MJ40 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC144BQ3MJ40 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC144BQ3MJ40 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 AP004609.3-201ENST00000610705 1884 ntBASIC27.32■■□□□ 1.96
CCDC144BQ3MJ40 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.31■■□□□ 1.96
CCDC144BQ3MJ40 KRT18P10-201ENST00000388836 1287 ntBASIC27.31■■□□□ 1.96
CCDC144BQ3MJ40 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.31■■□□□ 1.96
CCDC144BQ3MJ40 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.31■■□□□ 1.96
CCDC144BQ3MJ40 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC144BQ3MJ40 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 AC019069.1-201ENST00000610008 1333 ntBASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC144BQ3MJ40 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 AC022616.5-201ENST00000518796 181 ntBASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC144BQ3MJ40 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC144BQ3MJ40 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.26■■□□□ 1.95
CCDC144BQ3MJ40 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC144BQ3MJ40 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
CCDC144BQ3MJ40 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.24■■□□□ 1.95
CCDC144BQ3MJ40 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 KRT125P-201ENST00000546827 989 ntBASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC144BQ3MJ40 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms