Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.01■□□□□ 0.63
CDX1P47902 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX1P47902 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX1P47902 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX1P47902 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX1P47902 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CDX1P47902 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.01■□□□□ 0.63
CDX1P47902 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX1P47902 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX1P47902 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX1P47902 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 AL592293.1-201ENST00000502889 1188 ntBASIC19■□□□□ 0.63
CDX1P47902 RAP2CP1-202ENST00000605179 643 ntBASIC19■□□□□ 0.63
CDX1P47902 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19■□□□□ 0.63
CDX1P47902 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
CDX1P47902 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19■□□□□ 0.63
CDX1P47902 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19■□□□□ 0.63
CDX1P47902 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19■□□□□ 0.63
CDX1P47902 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX1P47902 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CDX1P47902 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CDX1P47902 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CDX1P47902 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.99■□□□□ 0.63
CDX1P47902 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CDX1P47902 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.99■□□□□ 0.63
CDX1P47902 AL024507.2-201ENST00000606070 2574 ntBASIC18.99■□□□□ 0.63
CDX1P47902 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.99■□□□□ 0.63
CDX1P47902 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
CDX1P47902 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.98■□□□□ 0.63
CDX1P47902 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CDX1P47902 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX1P47902 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDX1P47902 TSPY13P-201ENST00000338964 914 ntBASIC18.98■□□□□ 0.63
CDX1P47902 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX1P47902 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.98■□□□□ 0.63
CDX1P47902 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDX1P47902 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDX1P47902 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDX1P47902 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.97■□□□□ 0.63
CDX1P47902 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDX1P47902 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CDX1P47902 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.97■□□□□ 0.63
CDX1P47902 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.96■□□□□ 0.63
CDX1P47902 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 AC004987.1-201ENST00000428627 508 ntBASIC18.96■□□□□ 0.63
CDX1P47902 ATP5G2P3-201ENST00000429083 425 ntBASIC18.96■□□□□ 0.63
CDX1P47902 AL033527.3-201ENST00000566366 1196 ntBASIC18.96■□□□□ 0.63
CDX1P47902 AC129492.7-201ENST00000622992 756 ntBASIC18.96■□□□□ 0.63
CDX1P47902 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.96■□□□□ 0.63
CDX1P47902 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX1P47902 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CDX1P47902 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CDX1P47902 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC18.95■□□□□ 0.62
CDX1P47902 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX1P47902 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDX1P47902 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.94■□□□□ 0.62
CDX1P47902 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX1P47902 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CDX1P47902 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX1P47902 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDX1P47902 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDX1P47902 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDX1P47902 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.94■□□□□ 0.62
CDX1P47902 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX1P47902 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX1P47902 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX1P47902 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX1P47902 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CDX1P47902 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CDX1P47902 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX1P47902 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CDX1P47902 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDX1P47902 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.92■□□□□ 0.62
CDX1P47902 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.92■□□□□ 0.62
CDX1P47902 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDX1P47902 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms