Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.91■■■□□ 2.06
HMGB1P09429 MIR6089-201ENST00000616698 64 ntBASIC27.91■■■□□ 2.06
HMGB1P09429 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
HMGB1P09429 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.9■■■□□ 2.06
HMGB1P09429 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
HMGB1P09429 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
HMGB1P09429 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
HMGB1P09429 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
HMGB1P09429 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
HMGB1P09429 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
HMGB1P09429 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.89■■■□□ 2.05
HMGB1P09429 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
HMGB1P09429 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.05
HMGB1P09429 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.89■■■□□ 2.05
HMGB1P09429 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.89■■■□□ 2.05
HMGB1P09429 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC27.89■■■□□ 2.05
HMGB1P09429 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
HMGB1P09429 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
HMGB1P09429 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
HMGB1P09429 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
HMGB1P09429 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
HMGB1P09429 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
HMGB1P09429 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
HMGB1P09429 EED-207ENST00000528180 1745 ntTSL 5 BASIC27.86■■■□□ 2.05
HMGB1P09429 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC27.86■■■□□ 2.05
HMGB1P09429 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
HMGB1P09429 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
HMGB1P09429 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC27.85■■■□□ 2.05
HMGB1P09429 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.85■■■□□ 2.05
HMGB1P09429 AC135731.1-201ENST00000569415 2548 ntBASIC27.85■■■□□ 2.05
HMGB1P09429 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
HMGB1P09429 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
HMGB1P09429 AL139125.2-201ENST00000623134 1869 ntBASIC27.85■■■□□ 2.05
HMGB1P09429 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
HMGB1P09429 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.84■■■□□ 2.05
HMGB1P09429 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.84■■■□□ 2.05
HMGB1P09429 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
HMGB1P09429 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC27.84■■■□□ 2.05
HMGB1P09429 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
HMGB1P09429 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.83■■■□□ 2.05
HMGB1P09429 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
HMGB1P09429 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.83■■■□□ 2.05
HMGB1P09429 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
HMGB1P09429 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.83■■■□□ 2.05
HMGB1P09429 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.83■■■□□ 2.05
HMGB1P09429 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
HMGB1P09429 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
HMGB1P09429 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.82■■■□□ 2.04
HMGB1P09429 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.82■■■□□ 2.04
HMGB1P09429 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
HMGB1P09429 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
HMGB1P09429 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.81■■■□□ 2.04
HMGB1P09429 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.81■■■□□ 2.04
HMGB1P09429 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
HMGB1P09429 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
HMGB1P09429 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.8■■■□□ 2.04
HMGB1P09429 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
HMGB1P09429 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.8■■■□□ 2.04
HMGB1P09429 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
HMGB1P09429 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.8■■■□□ 2.04
HMGB1P09429 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC27.79■■■□□ 2.04
HMGB1P09429 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC27.79■■■□□ 2.04
HMGB1P09429 LONRF2P2-201ENST00000439212 571 ntBASIC27.79■■■□□ 2.04
HMGB1P09429 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
HMGB1P09429 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC27.79■■■□□ 2.04
HMGB1P09429 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC27.78■■■□□ 2.04
HMGB1P09429 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC27.78■■■□□ 2.04
HMGB1P09429 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
HMGB1P09429 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.78■■■□□ 2.04
HMGB1P09429 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC27.77■■■□□ 2.04
HMGB1P09429 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
HMGB1P09429 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
HMGB1P09429 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.77■■■□□ 2.04
HMGB1P09429 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
HMGB1P09429 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
HMGB1P09429 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC27.76■■■□□ 2.04
HMGB1P09429 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.04
HMGB1P09429 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 AL592295.1-201ENST00000400984 884 ntBASIC27.76■■■□□ 2.03
HMGB1P09429 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.76■■■□□ 2.03
HMGB1P09429 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
HMGB1P09429 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms