Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
FOXN1O15353 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
FOXN1O15353 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
FOXN1O15353 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
FOXN1O15353 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
FOXN1O15353 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.39■■■□□ 2.14
FOXN1O15353 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.39■■■□□ 2.13
FOXN1O15353 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.39■■■□□ 2.13
FOXN1O15353 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.39■■■□□ 2.13
FOXN1O15353 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.38■■■□□ 2.13
FOXN1O15353 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC28.38■■■□□ 2.13
FOXN1O15353 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
FOXN1O15353 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.37■■■□□ 2.13
FOXN1O15353 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC28.37■■■□□ 2.13
FOXN1O15353 AC087623.3-201ENST00000607047 1098 ntBASIC28.37■■■□□ 2.13
FOXN1O15353 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
FOXN1O15353 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
FOXN1O15353 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.36■■■□□ 2.13
FOXN1O15353 AC097381.1-201ENST00000429019 1296 ntBASIC28.36■■■□□ 2.13
FOXN1O15353 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.35■■■□□ 2.13
FOXN1O15353 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC28.35■■■□□ 2.13
FOXN1O15353 AC105265.2-201ENST00000467189 838 ntBASIC28.35■■■□□ 2.13
FOXN1O15353 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
FOXN1O15353 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC28.35■■■□□ 2.13
FOXN1O15353 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
FOXN1O15353 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.35■■■□□ 2.13
FOXN1O15353 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
FOXN1O15353 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC28.34■■■□□ 2.13
FOXN1O15353 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
FOXN1O15353 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.33■■■□□ 2.13
FOXN1O15353 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.33■■■□□ 2.13
FOXN1O15353 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
FOXN1O15353 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
FOXN1O15353 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
FOXN1O15353 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
FOXN1O15353 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
FOXN1O15353 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.32■■■□□ 2.12
FOXN1O15353 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC28.32■■■□□ 2.12
FOXN1O15353 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.32■■■□□ 2.12
FOXN1O15353 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC28.32■■■□□ 2.12
FOXN1O15353 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
FOXN1O15353 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
FOXN1O15353 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.32■■■□□ 2.12
FOXN1O15353 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
FOXN1O15353 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.31■■■□□ 2.12
FOXN1O15353 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC28.31■■■□□ 2.12
FOXN1O15353 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
FOXN1O15353 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.31■■■□□ 2.12
FOXN1O15353 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.3■■■□□ 2.12
FOXN1O15353 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
FOXN1O15353 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
FOXN1O15353 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
FOXN1O15353 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
FOXN1O15353 MTDHP2-201ENST00000601468 714 ntBASIC28.29■■■□□ 2.12
FOXN1O15353 RASSF1-AS1-201ENST00000629828 790 ntBASIC28.29■■■□□ 2.12
FOXN1O15353 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.29■■■□□ 2.12
FOXN1O15353 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
FOXN1O15353 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
FOXN1O15353 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
FOXN1O15353 AK3-203ENST00000447596 705 ntTSL 2 BASIC28.28■■■□□ 2.12
FOXN1O15353 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
FOXN1O15353 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.28■■■□□ 2.12
FOXN1O15353 AC120024.1-201ENST00000562672 995 ntBASIC28.28■■■□□ 2.12
FOXN1O15353 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.28■■■□□ 2.12
FOXN1O15353 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
FOXN1O15353 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 UNC93B3-201ENST00000308076 687 ntBASIC28.27■■■□□ 2.12
FOXN1O15353 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.27■■■□□ 2.12
FOXN1O15353 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
FOXN1O15353 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
FOXN1O15353 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
FOXN1O15353 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
FOXN1O15353 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.26■■■□□ 2.11
FOXN1O15353 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC28.25■■■□□ 2.11
FOXN1O15353 AL359504.2-201ENST00000605506 1601 ntBASIC28.25■■■□□ 2.11
FOXN1O15353 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
FOXN1O15353 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.25■■■□□ 2.11
FOXN1O15353 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
FOXN1O15353 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.25■■■□□ 2.11
FOXN1O15353 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
FOXN1O15353 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
FOXN1O15353 AL136162.1-201ENST00000607711 1078 ntBASIC28.24■■■□□ 2.11
FOXN1O15353 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
FOXN1O15353 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
FOXN1O15353 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
FOXN1O15353 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.23■■■□□ 2.11
FOXN1O15353 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.23■■■□□ 2.11
FOXN1O15353 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.23■■■□□ 2.11
FOXN1O15353 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
FOXN1O15353 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
FOXN1O15353 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms