Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SOX1O00570 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SOX1O00570 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SOX1O00570 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.7■■□□□ 1.7
SOX1O00570 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.7■■□□□ 1.7
SOX1O00570 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.7■■□□□ 1.7
SOX1O00570 MIR4767-201ENST00000582827 78 ntBASIC25.7■■□□□ 1.7
SOX1O00570 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SOX1O00570 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
SOX1O00570 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SOX1O00570 AC034268.1-201ENST00000441047 882 ntBASIC25.69■■□□□ 1.7
SOX1O00570 AC004448.1-201ENST00000458332 883 ntBASIC25.69■■□□□ 1.7
SOX1O00570 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
SOX1O00570 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SOX1O00570 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SOX1O00570 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SOX1O00570 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SOX1O00570 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SOX1O00570 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
SOX1O00570 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.68■■□□□ 1.7
SOX1O00570 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.68■■□□□ 1.7
SOX1O00570 HLA-L-209ENST00000420110 1011 ntBASIC25.68■■□□□ 1.7
SOX1O00570 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.68■■□□□ 1.7
SOX1O00570 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
SOX1O00570 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
SOX1O00570 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
SOX1O00570 AC011551.1-201ENST00000614101 683 ntBASIC25.67■■□□□ 1.7
SOX1O00570 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SOX1O00570 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SOX1O00570 AF131216.4-201ENST00000638924 1588 ntBASIC25.66■■□□□ 1.7
SOX1O00570 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.66■■□□□ 1.7
SOX1O00570 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SOX1O00570 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.66■■□□□ 1.7
SOX1O00570 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.66■■□□□ 1.7
SOX1O00570 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SOX1O00570 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.66■■□□□ 1.7
SOX1O00570 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
SOX1O00570 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.65■■□□□ 1.7
SOX1O00570 ABHD17AP1-201ENST00000358206 933 ntBASIC25.65■■□□□ 1.7
SOX1O00570 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.65■■□□□ 1.7
SOX1O00570 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
SOX1O00570 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SOX1O00570 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
SOX1O00570 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.65■■□□□ 1.7
SOX1O00570 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SOX1O00570 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SOX1O00570 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SOX1O00570 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SOX1O00570 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.64■■□□□ 1.7
SOX1O00570 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SOX1O00570 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
SOX1O00570 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SOX1O00570 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.63■■□□□ 1.69
SOX1O00570 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SOX1O00570 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SOX1O00570 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.62■■□□□ 1.69
SOX1O00570 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
SOX1O00570 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.62■■□□□ 1.69
SOX1O00570 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
SOX1O00570 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.61■■□□□ 1.69
SOX1O00570 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SOX1O00570 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.61■■□□□ 1.69
SOX1O00570 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.61■■□□□ 1.69
SOX1O00570 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.61■■□□□ 1.69
SOX1O00570 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
SOX1O00570 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SOX1O00570 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
SOX1O00570 AC027682.1-201ENST00000562846 899 ntBASIC25.6■■□□□ 1.69
SOX1O00570 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.6■■□□□ 1.69
SOX1O00570 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SOX1O00570 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SOX1O00570 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.6■■□□□ 1.69
SOX1O00570 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SOX1O00570 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SOX1O00570 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.59■■□□□ 1.69
SOX1O00570 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.59■■□□□ 1.69
SOX1O00570 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.59■■□□□ 1.69
SOX1O00570 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SOX1O00570 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.59■■□□□ 1.69
SOX1O00570 AL031602.1-201ENST00000633169 911 ntBASIC25.59■■□□□ 1.69
SOX1O00570 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
SOX1O00570 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SOX1O00570 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SOX1O00570 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SOX1O00570 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SOX1O00570 DUX4L19-201ENST00000557448 1267 ntBASIC25.58■■□□□ 1.69
SOX1O00570 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SOX1O00570 ABCB10P3-201ENST00000561950 2166 ntBASIC25.57■■□□□ 1.68
SOX1O00570 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SOX1O00570 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
SOX1O00570 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SOX1O00570 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SOX1O00570 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.57■■□□□ 1.68
SOX1O00570 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.57■■□□□ 1.68
SOX1O00570 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.57■■□□□ 1.68
SOX1O00570 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SOX1O00570 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SOX1O00570 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SOX1O00570 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.56■■□□□ 1.68
SOX1O00570 AC008764.7-201ENST00000593779 1081 ntBASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms