Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.14■□□□□ 0.66
ZNF541Q9H0D2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.14■□□□□ 0.66
ZNF541Q9H0D2 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
ZNF541Q9H0D2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 AHCYP2-201ENST00000430630 1300 ntBASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 BNIP3P1-202ENST00000550043 1585 ntBASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 NUS1P3-201ENST00000423502 862 ntBASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 MIR4722-201ENST00000578292 60 ntBASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF541Q9H0D2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC009053.2-201ENST00000563701 2365 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 LINC01144-201ENST00000626198 1710 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AL662890.1-201ENST00000396818 632 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 MTX1P1-201ENST00000440904 838 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC004898.1-201ENST00000451057 766 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 RPSAP36-202ENST00000494591 1261 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 CHMP4BP1-201ENST00000556017 588 ntBASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF541Q9H0D2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 AC018735.1-201ENST00000437208 1502 ntBASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms