Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC11.42□□□□□ -0.58
PRKDCP78527 OARD1-204ENST00000464633 717 ntTSL 2 BASIC11.42□□□□□ -0.58
PRKDCP78527 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
PRKDCP78527 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC11.42□□□□□ -0.58
PRKDCP78527 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC11.42□□□□□ -0.58
PRKDCP78527 AC004923.1-202ENST00000642106 209 ntBASIC11.42□□□□□ -0.58
PRKDCP78527 AC098818.2-201ENST00000564925 2320 ntBASIC11.42□□□□□ -0.58
PRKDCP78527 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PRKDCP78527 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.42□□□□□ -0.58
PRKDCP78527 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC11.42□□□□□ -0.58
PRKDCP78527 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC11.42□□□□□ -0.58
PRKDCP78527 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PRKDCP78527 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PRKDCP78527 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC11.42□□□□□ -0.58
PRKDCP78527 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
PRKDCP78527 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 DPM3-202ENST00000368399 517 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 AL133466.1-201ENST00000447582 150 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 GPAA1P2-202ENST00000606848 1787 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 RPL18P13-201ENST00000478088 569 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC11.41□□□□□ -0.58
PRKDCP78527 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 AC012158.2-201ENST00000536546 354 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 SYT17-208ENST00000568433 812 ntTSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 AC004899.1-201ENST00000424687 1714 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
PRKDCP78527 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 SLED1-202ENST00000512051 380 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 AL160314.3-201ENST00000556041 767 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 AC243562.2-201ENST00000561247 970 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 CRCP-204ENST00000398684 492 ntTSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 NAGK-204ENST00000443872 878 ntTSL 3 BASIC11.41□□□□□ -0.58
PRKDCP78527 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.41□□□□□ -0.58
PRKDCP78527 AC092171.5-201ENST00000608012 942 ntBASIC11.41□□□□□ -0.58
PRKDCP78527 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PRKDCP78527 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC11.41□□□□□ -0.58
PRKDCP78527 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 ACKR1-201ENST00000368121 1240 ntBASIC11.4□□□□□ -0.58
PRKDCP78527 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
PRKDCP78527 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC11.4□□□□□ -0.58
PRKDCP78527 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
PRKDCP78527 AL161773.1-201ENST00000624845 863 ntBASIC11.4□□□□□ -0.58
PRKDCP78527 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms