Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.25□□□□□ -0.45
FOXA3P55318 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
FOXA3P55318 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC12.25□□□□□ -0.45
FOXA3P55318 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 SNX5-210ENST00000481323 562 ntTSL 3 BASIC12.25□□□□□ -0.45
FOXA3P55318 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC12.25□□□□□ -0.45
FOXA3P55318 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC12.25□□□□□ -0.45
FOXA3P55318 AC011467.2-201ENST00000598425 242 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 AC011558.1-201ENST00000623459 338 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 AL590326.2-201ENST00000625139 305 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 AC087386.2-201ENST00000623212 4637 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 PMPCAP1-201ENST00000508114 1576 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 AC007292.2-201ENST00000593524 1812 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 LINC01101-201ENST00000622953 1884 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA3P55318 AC005089.1-201ENST00000619486 2241 ntBASIC12.25□□□□□ -0.45
FOXA3P55318 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
FOXA3P55318 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
FOXA3P55318 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
FOXA3P55318 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 BAALC-201ENST00000297574 801 ntTSL 3 BASIC12.24□□□□□ -0.45
FOXA3P55318 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 CCS-201ENST00000310190 942 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.24□□□□□ -0.45
FOXA3P55318 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 KRT18P22-201ENST00000402024 1347 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 AL020989.1-201ENST00000422979 469 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 AC243591.1-201ENST00000452967 1364 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.24□□□□□ -0.45
FOXA3P55318 COX11P1-201ENST00000489116 835 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC12.24□□□□□ -0.45
FOXA3P55318 VENTXP5-201ENST00000523979 775 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 AC011840.4-201ENST00000578471 627 ntBASIC12.24□□□□□ -0.45
FOXA3P55318 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
FOXA3P55318 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
FOXA3P55318 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 WDR6-223ENST00000627177 207 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA3P55318 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
FOXA3P55318 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
FOXA3P55318 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms