Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 AC005912.2-201ENST00000619492 2400 ntBASIC15.22■□□□□ 0.03
TCRBV3S1A0A5B6 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 AP002383.4-201ENST00000442518 975 ntBASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 AC245100.5-201ENST00000452108 331 ntBASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 AC092329.2-201ENST00000598402 547 ntBASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 AP001269.4-201ENST00000609611 512 ntBASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.21■□□□□ 0.03
TCRBV3S1A0A5B6 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TCRBV3S1A0A5B6 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 NKAPP1-205ENST00000585790 367 ntBASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 AC004706.3-202ENST00000621574 984 ntBASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 AC126365.1-201ENST00000578585 1514 ntBASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 AC009090.5-201ENST00000624886 2285 ntBASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms