Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 AC245100.5-201ENST00000452108 331 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SERBP1P3-201ENST00000459980 809 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 RN7SL618P-201ENST00000477850 296 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 AC010336.2-201ENST00000564226 506 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 AGGF1P2-201ENST00000426656 2106 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ME2P1-201ENST00000426028 1970 ntBASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 AC092171.3-201ENST00000610122 2651 ntBASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLCF1Q9UBD9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 AD000864.1-201ENST00000624076 2295 ntBASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLCF1Q9UBD9 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms