Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 AP002414.3-201ENST00000589352 1468 ntBASIC15.08■□□□□ 0
POLR2J3Q9H1A7 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.08■□□□□ 0
POLR2J3Q9H1A7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 AC069224.1-201ENST00000566372 1715 ntBASIC15.07■□□□□ 0
POLR2J3Q9H1A7 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
POLR2J3Q9H1A7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 AC023824.1-201ENST00000562945 2975 ntBASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 HNRNPDP1-201ENST00000439535 754 ntBASIC15.06■□□□□ 0
POLR2J3Q9H1A7 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.06■□□□□ 0
POLR2J3Q9H1A7 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.05■□□□□ 0
POLR2J3Q9H1A7 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms