Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.65■□□□□ 0.26
CDX2Q99626 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.65■□□□□ 0.26
CDX2Q99626 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.65■□□□□ 0.26
CDX2Q99626 AC097065.1-201ENST00000425737 517 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.65■□□□□ 0.26
CDX2Q99626 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CDX2Q99626 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.65■□□□□ 0.26
CDX2Q99626 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 ECM1P1-201ENST00000604092 1279 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 AC025181.2-201ENST00000606994 802 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.65■□□□□ 0.26
CDX2Q99626 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.65■□□□□ 0.26
CDX2Q99626 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.65■□□□□ 0.26
CDX2Q99626 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
CDX2Q99626 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CDX2Q99626 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.26
CDX2Q99626 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CDX2Q99626 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CDX2Q99626 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDX2Q99626 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CDX2Q99626 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.64■□□□□ 0.25
CDX2Q99626 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 AC011742.3-201ENST00000439053 820 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 AC019193.1-201ENST00000506678 823 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 AC005740.2-201ENST00000511085 419 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.64■□□□□ 0.25
CDX2Q99626 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.64■□□□□ 0.25
CDX2Q99626 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 AC015910.1-201ENST00000579400 975 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 AC132192.2-201ENST00000596206 1147 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CDX2Q99626 AC000095.1-201ENST00000603208 874 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 AL136301.1-201ENST00000615830 422 ntBASIC16.64■□□□□ 0.25
CDX2Q99626 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.64■□□□□ 0.25
CDX2Q99626 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.64■□□□□ 0.25
CDX2Q99626 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.64■□□□□ 0.25
CDX2Q99626 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CDX2Q99626 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDX2Q99626 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.63■□□□□ 0.25
CDX2Q99626 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 AC026316.1-201ENST00000398900 414 ntBASIC16.63■□□□□ 0.25
CDX2Q99626 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.63■□□□□ 0.25
CDX2Q99626 CTBP2P4-201ENST00000513884 920 ntBASIC16.63■□□□□ 0.25
CDX2Q99626 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 AC124947.2-201ENST00000547118 1133 ntBASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms