Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 AC092053.1-201ENST00000605787 1936 ntBASIC15.64■□□□□ 0.09
COL28A1Q2UY09 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SPDYE19P-201ENST00000338590 713 ntBASIC15.64■□□□□ 0.09
COL28A1Q2UY09 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 AC103810.3-201ENST00000583567 96 ntBASIC15.64■□□□□ 0.09
COL28A1Q2UY09 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 AC244093.1-201ENST00000610837 814 ntBASIC15.64■□□□□ 0.09
COL28A1Q2UY09 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 PCDHB19P-201ENST00000570871 2371 ntBASIC15.64■□□□□ 0.09
COL28A1Q2UY09 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.64■□□□□ 0.09
COL28A1Q2UY09 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 FLJ38576-201ENST00000623820 2459 ntBASIC15.63■□□□□ 0.09
COL28A1Q2UY09 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AC020907.1-201ENST00000616460 1350 ntBASIC15.63■□□□□ 0.09
COL28A1Q2UY09 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AP3S2-216ENST00000617003 1561 ntBASIC15.63■□□□□ 0.09
COL28A1Q2UY09 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL28A1Q2UY09 UBALD1-205ENST00000590891 2641 ntBASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms