Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
YBX1P67809 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
YBX1P67809 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 PRAL-201ENST00000624952 3286 ntBASIC15.84■□□□□ 0.13
YBX1P67809 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.84■□□□□ 0.13
YBX1P67809 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.84■□□□□ 0.13
YBX1P67809 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.84■□□□□ 0.13
YBX1P67809 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.84■□□□□ 0.13
YBX1P67809 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.84■□□□□ 0.13
YBX1P67809 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 AP001160.2-201ENST00000596071 487 ntBASIC15.84■□□□□ 0.13
YBX1P67809 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.84■□□□□ 0.13
YBX1P67809 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 LINC01144-201ENST00000626198 1710 ntBASIC15.84■□□□□ 0.13
YBX1P67809 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.84■□□□□ 0.13
YBX1P67809 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.84■□□□□ 0.13
YBX1P67809 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
YBX1P67809 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.84■□□□□ 0.13
YBX1P67809 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.83■□□□□ 0.13
YBX1P67809 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
YBX1P67809 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
YBX1P67809 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
YBX1P67809 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.83■□□□□ 0.13
YBX1P67809 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.83■□□□□ 0.13
YBX1P67809 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
YBX1P67809 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 CNN2P11-201ENST00000429351 262 ntBASIC15.83■□□□□ 0.12
YBX1P67809 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 AC093724.1-201ENST00000448659 1027 ntBASIC15.83■□□□□ 0.12
YBX1P67809 RN7SL589P-201ENST00000481268 310 ntBASIC15.83■□□□□ 0.12
YBX1P67809 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 PRYP6-201ENST00000514804 343 ntBASIC15.83■□□□□ 0.12
YBX1P67809 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.83■□□□□ 0.12
YBX1P67809 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 AC008267.7-201ENST00000624570 1194 ntBASIC15.83■□□□□ 0.12
YBX1P67809 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
YBX1P67809 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.83■□□□□ 0.12
YBX1P67809 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.83■□□□□ 0.12
YBX1P67809 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.83■□□□□ 0.12
YBX1P67809 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.83■□□□□ 0.12
YBX1P67809 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.83■□□□□ 0.12
YBX1P67809 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
YBX1P67809 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
YBX1P67809 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
YBX1P67809 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.82■□□□□ 0.12
YBX1P67809 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
YBX1P67809 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.82■□□□□ 0.12
YBX1P67809 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 PKD1P1-201ENST00000458669 6805 ntBASIC15.82■□□□□ 0.12
YBX1P67809 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
YBX1P67809 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms