Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.81■□□□□ 0.28
COPAP53621 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.81■□□□□ 0.28
COPAP53621 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.81■□□□□ 0.28
COPAP53621 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.81■□□□□ 0.28
COPAP53621 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.81■□□□□ 0.28
COPAP53621 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.81■□□□□ 0.28
COPAP53621 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 AC021097.1-201ENST00000607902 574 ntBASIC16.81■□□□□ 0.28
COPAP53621 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COPAP53621 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COPAP53621 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.81■□□□□ 0.28
COPAP53621 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COPAP53621 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COPAP53621 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.8■□□□□ 0.28
COPAP53621 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COPAP53621 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.8■□□□□ 0.28
COPAP53621 TREML5P-201ENST00000421694 576 ntBASIC16.8■□□□□ 0.28
COPAP53621 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.8■□□□□ 0.28
COPAP53621 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.8■□□□□ 0.28
COPAP53621 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.8■□□□□ 0.28
COPAP53621 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.8■□□□□ 0.28
COPAP53621 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.8■□□□□ 0.28
COPAP53621 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.8■□□□□ 0.28
COPAP53621 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.8■□□□□ 0.28
COPAP53621 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.8■□□□□ 0.28
COPAP53621 MIR6080-201ENST00000617359 66 ntBASIC16.8■□□□□ 0.28
COPAP53621 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.8■□□□□ 0.28
COPAP53621 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COPAP53621 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.8■□□□□ 0.28
COPAP53621 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COPAP53621 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COPAP53621 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.79■□□□□ 0.28
COPAP53621 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.79■□□□□ 0.28
COPAP53621 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COPAP53621 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COPAP53621 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 AC142381.1-201ENST00000426099 345 ntBASIC16.79■□□□□ 0.28
COPAP53621 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.79■□□□□ 0.28
COPAP53621 BASP1P1-201ENST00000430708 665 ntBASIC16.79■□□□□ 0.28
COPAP53621 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.79■□□□□ 0.28
COPAP53621 INGX-202ENST00000489074 768 ntBASIC16.79■□□□□ 0.28
COPAP53621 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.79■□□□□ 0.28
COPAP53621 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.79■□□□□ 0.28
COPAP53621 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.79■□□□□ 0.28
COPAP53621 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COPAP53621 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COPAP53621 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms