Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.58□□□□□ -0.39
HOXD3P31249 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HOXD3P31249 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HOXD3P31249 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.58□□□□□ -0.4
HOXD3P31249 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HOXD3P31249 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
HOXD3P31249 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
HOXD3P31249 HLA-H-201ENST00000383620 1096 ntBASIC12.58□□□□□ -0.4
HOXD3P31249 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.58□□□□□ -0.4
HOXD3P31249 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.58□□□□□ -0.4
HOXD3P31249 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.58□□□□□ -0.4
HOXD3P31249 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.58□□□□□ -0.4
HOXD3P31249 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXD3P31249 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXD3P31249 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXD3P31249 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HOXD3P31249 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXD3P31249 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 AC005622.1-201ENST00000636801 1703 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
HOXD3P31249 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC12.57□□□□□ -0.4
HOXD3P31249 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXD3P31249 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXD3P31249 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXD3P31249 AC241585.1-201ENST00000433527 519 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.57□□□□□ -0.4
HOXD3P31249 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 POU5F1P6-201ENST00000466990 990 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 SERBP1P5-201ENST00000510079 1181 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 AP005018.1-201ENST00000525475 301 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXD3P31249 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 AC008894.3-201ENST00000624324 3103 ntBASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms