Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HMGB1P09429 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 AP005117.1-202ENST00000581724 1908 ntBASIC19.15■□□□□ 0.66
HMGB1P09429 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.15■□□□□ 0.66
HMGB1P09429 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB1P09429 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.15■□□□□ 0.66
HMGB1P09429 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGB1P09429 HLA-H-201ENST00000383620 1096 ntBASIC19.15■□□□□ 0.66
HMGB1P09429 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.15■□□□□ 0.66
HMGB1P09429 AL592309.1-201ENST00000443127 649 ntBASIC19.15■□□□□ 0.66
HMGB1P09429 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HMGB1P09429 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.15■□□□□ 0.66
HMGB1P09429 MIR3687-2-201ENST00000577708 61 ntBASIC19.15■□□□□ 0.66
HMGB1P09429 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB1P09429 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGB1P09429 MIR3687-1-201ENST00000614492 61 ntBASIC19.15■□□□□ 0.66
HMGB1P09429 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGB1P09429 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB1P09429 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGB1P09429 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB1P09429 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB1P09429 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB1P09429 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGB1P09429 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.14■□□□□ 0.66
HMGB1P09429 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGB1P09429 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.14■□□□□ 0.65
HMGB1P09429 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.14■□□□□ 0.65
HMGB1P09429 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 AC055717.3-201ENST00000622967 595 ntBASIC19.14■□□□□ 0.65
HMGB1P09429 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
HMGB1P09429 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB1P09429 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
HMGB1P09429 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB1P09429 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 AC069335.1-201ENST00000489972 472 ntBASIC19.13■□□□□ 0.65
HMGB1P09429 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.13■□□□□ 0.65
HMGB1P09429 RNA5SP410-201ENST00000516285 106 ntBASIC19.13■□□□□ 0.65
HMGB1P09429 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGB1P09429 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGB1P09429 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGB1P09429 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGB1P09429 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB1P09429 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HMGB1P09429 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms