Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP2AO43633 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP2AO43633 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP2AO43633 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP2AO43633 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP2AO43633 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.26■□□□□ 0.51
CHMP2AO43633 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP2AO43633 SPDYE12P-201ENST00000618416 771 ntBASIC18.26■□□□□ 0.51
CHMP2AO43633 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CHMP2AO43633 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP2AO43633 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP2AO43633 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CHMP2AO43633 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.25■□□□□ 0.51
CHMP2AO43633 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.25■□□□□ 0.51
CHMP2AO43633 RN7SL828P-201ENST00000607615 303 ntBASIC18.25■□□□□ 0.51
CHMP2AO43633 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP2AO43633 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP2AO43633 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP2AO43633 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.24■□□□□ 0.51
CHMP2AO43633 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CHMP2AO43633 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.24■□□□□ 0.51
CHMP2AO43633 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms