Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 AL596257.1-201ENST00000641463 2694 ntBASIC16.83■□□□□ 0.28
PCDH9Q9HC56 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.83■□□□□ 0.28
PCDH9Q9HC56 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 AC092919.2-201ENST00000623631 1645 ntBASIC16.82■□□□□ 0.28
PCDH9Q9HC56 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 LINC00554-201ENST00000564841 3011 ntBASIC16.82■□□□□ 0.28
PCDH9Q9HC56 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH9Q9HC56 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 AC008677.1-201ENST00000519230 1561 ntBASIC16.81■□□□□ 0.28
PCDH9Q9HC56 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 AC004832.2-201ENST00000426397 482 ntBASIC16.81■□□□□ 0.28
PCDH9Q9HC56 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 AL009183.1-201ENST00000603760 355 ntBASIC16.81■□□□□ 0.28
PCDH9Q9HC56 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH9Q9HC56 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 MCCD1P2-201ENST00000423228 335 ntBASIC16.8■□□□□ 0.28
PCDH9Q9HC56 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms