Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC092053.1-201ENST00000605787 1936 ntBASIC16.4■□□□□ 0.22
TRIM4Q9C037 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM4Q9C037 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 AC005915.1-201ENST00000624912 2018 ntBASIC16.4■□□□□ 0.22
TRIM4Q9C037 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM4Q9C037 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM4Q9C037 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM4Q9C037 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 AL365203.3-201ENST00000609742 2057 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 BCRP1-201ENST00000444246 691 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 STK25P1-201ENST00000585406 838 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 MIR1199-201ENST00000621445 119 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 AL353593.2-201ENST00000602529 1483 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 AC093525.9-201ENST00000624961 1746 ntBASIC16.39■□□□□ 0.21
TRIM4Q9C037 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM4Q9C037 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM4Q9C037 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM4Q9C037 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM4Q9C037 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.37■□□□□ 0.21
TRIM4Q9C037 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM4Q9C037 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM4Q9C037 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM4Q9C037 INTS4P1-201ENST00000438455 1935 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms