Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AL355472.2-201ENST00000422958 438 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AC002558.1-201ENST00000488906 803 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AC005181.1-201ENST00000604782 1256 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AL139011.1-202ENST00000642063 584 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 MST1P2-201ENST00000457982 2291 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 LINC00167-201ENST00000530583 1419 ntBASIC10.09□□□□□ -0.79
LINC00643Q86TS7 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 HADH-202ENST00000403312 1752 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 POU5F1P6-201ENST00000466990 990 ntBASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms