Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH12P55289 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.23■□□□□ 0.03
CDH12P55289 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH12P55289 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CDH12P55289 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH12P55289 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CDH12P55289 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CDH12P55289 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.22■□□□□ 0.03
CDH12P55289 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.22■□□□□ 0.03
CDH12P55289 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 KRT18P67-201ENST00000432816 1264 ntBASIC15.22■□□□□ 0.03
CDH12P55289 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 AC148477.8-201ENST00000624298 468 ntBASIC15.22■□□□□ 0.03
CDH12P55289 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH12P55289 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH12P55289 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH12P55289 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH12P55289 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH12P55289 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CDH12P55289 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CDH12P55289 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH12P55289 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 MIR648-201ENST00000385046 94 ntBASIC15.21■□□□□ 0.03
CDH12P55289 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH12P55289 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CDH12P55289 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH12P55289 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH12P55289 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH12P55289 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.21■□□□□ 0.03
CDH12P55289 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.21■□□□□ 0.03
CDH12P55289 AC020765.3-201ENST00000613051 740 ntBASIC15.21■□□□□ 0.03
CDH12P55289 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 AC005593.1-201ENST00000624894 515 ntBASIC15.21■□□□□ 0.03
CDH12P55289 PGM5P2-202ENST00000637225 1043 ntBASIC15.21■□□□□ 0.03
CDH12P55289 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH12P55289 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms