Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 LINC01144-201ENST00000626198 1710 ntBASIC14.35□□□□□ -0.11
LMX1BO60663 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 AC144831.1-201ENST00000573312 2656 ntBASIC14.35□□□□□ -0.11
LMX1BO60663 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.35□□□□□ -0.11
LMX1BO60663 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.35□□□□□ -0.11
LMX1BO60663 AC004877.2-201ENST00000623941 599 ntBASIC14.35□□□□□ -0.11
LMX1BO60663 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
LMX1BO60663 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 BCAR1-209ENST00000546196 1340 ntBASIC14.35□□□□□ -0.11
LMX1BO60663 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.35□□□□□ -0.11
LMX1BO60663 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LMX1BO60663 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMX1BO60663 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LMX1BO60663 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.34□□□□□ -0.11
LMX1BO60663 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.34□□□□□ -0.11
LMX1BO60663 ACTG1P14-201ENST00000446382 1122 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.34□□□□□ -0.11
LMX1BO60663 AC096734.2-201ENST00000562054 433 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 PDPK2P-202ENST00000562415 1191 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LMX1BO60663 GGTLC5P-201ENST00000617623 998 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms