Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 INTS4P1-203ENST00000641008 3683 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC239859.2-201ENST00000444165 318 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 UNC93B8-201ENST00000511903 705 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AL512631.2-201ENST00000604634 923 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 REXO1L8P-201ENST00000604378 1897 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC112693.3-201ENST00000624819 1983 ntBASIC10.12□□□□□ -0.79
LINC00643Q86TS7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 AC105206.1-202ENST00000314927 2368 ntBASIC10.11□□□□□ -0.79
LINC00643Q86TS7 AC083964.2-201ENST00000623988 2396 ntBASIC10.11□□□□□ -0.79
LINC00643Q86TS7 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 AC008687.5-201ENST00000593746 558 ntBASIC10.11□□□□□ -0.79
LINC00643Q86TS7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 USP47-202ENST00000339865 7775 ntTSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 C18orf15-201ENST00000623680 2534 ntBASIC10.11□□□□□ -0.79
LINC00643Q86TS7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
LINC00643Q86TS7 GPR89P-201ENST00000407924 1495 ntBASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC10.1□□□□□ -0.79
LINC00643Q86TS7 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms