Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
CLCN3P51790 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 NKILA-202ENST00000614771 2598 ntBASIC17.81■□□□□ 0.44
CLCN3P51790 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.81■□□□□ 0.44
CLCN3P51790 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.81■□□□□ 0.44
CLCN3P51790 AL132655.2-201ENST00000596276 594 ntBASIC17.81■□□□□ 0.44
CLCN3P51790 AC239800.4-201ENST00000603712 296 ntBASIC17.81■□□□□ 0.44
CLCN3P51790 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.81■□□□□ 0.44
CLCN3P51790 AL109936.8-201ENST00000641772 604 ntBASIC17.81■□□□□ 0.44
CLCN3P51790 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.81■□□□□ 0.44
CLCN3P51790 BTBD7P1-201ENST00000447253 1453 ntBASIC17.81■□□□□ 0.44
CLCN3P51790 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLCN3P51790 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CLCN3P51790 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.8■□□□□ 0.44
CLCN3P51790 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CLCN3P51790 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.8■□□□□ 0.44
CLCN3P51790 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCN3P51790 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCN3P51790 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCN3P51790 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCN3P51790 AC005225.4-201ENST00000557330 545 ntBASIC17.8■□□□□ 0.44
CLCN3P51790 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCN3P51790 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.8■□□□□ 0.44
CLCN3P51790 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 AC007541.1-201ENST00000570282 1469 ntBASIC17.8■□□□□ 0.44
CLCN3P51790 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCN3P51790 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CLCN3P51790 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCN3P51790 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CLCN3P51790 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CLCN3P51790 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.79■□□□□ 0.44
CLCN3P51790 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.79■□□□□ 0.44
CLCN3P51790 AC005034.1-201ENST00000426657 489 ntBASIC17.79■□□□□ 0.44
CLCN3P51790 AC114501.2-201ENST00000439631 535 ntBASIC17.79■□□□□ 0.44
CLCN3P51790 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CLCN3P51790 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 MIR6069-201ENST00000620069 79 ntBASIC17.79■□□□□ 0.44
CLCN3P51790 AL035252.4-201ENST00000624174 288 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms