Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16■□□□□ 0.15
SHMT2P34897 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16■□□□□ 0.15
SHMT2P34897 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16■□□□□ 0.15
SHMT2P34897 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16■□□□□ 0.15
SHMT2P34897 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 GGT3P-204ENST00000453783 1664 ntBASIC15.99■□□□□ 0.15
SHMT2P34897 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.99■□□□□ 0.15
SHMT2P34897 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 AL627223.1-201ENST00000416693 442 ntBASIC15.99■□□□□ 0.15
SHMT2P34897 AC023141.5-201ENST00000458585 616 ntBASIC15.99■□□□□ 0.15
SHMT2P34897 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.99■□□□□ 0.15
SHMT2P34897 AC069335.1-201ENST00000489972 472 ntBASIC15.99■□□□□ 0.15
SHMT2P34897 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.99■□□□□ 0.15
SHMT2P34897 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.99■□□□□ 0.15
SHMT2P34897 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 PCGF3-213ENST00000620529 1899 ntBASIC15.99■□□□□ 0.15
SHMT2P34897 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHMT2P34897 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SHMT2P34897 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHMT2P34897 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
SHMT2P34897 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 KRT18P32-201ENST00000424695 1287 ntBASIC15.98■□□□□ 0.15
SHMT2P34897 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.98■□□□□ 0.15
SHMT2P34897 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.98■□□□□ 0.15
SHMT2P34897 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms