Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC9.94□□□□□ -0.82
APOBP04114 AP003171.2-201ENST00000528208 925 ntBASIC9.94□□□□□ -0.82
APOBP04114 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC9.94□□□□□ -0.82
APOBP04114 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
APOBP04114 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC9.94□□□□□ -0.82
APOBP04114 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
APOBP04114 GNE-204ENST00000539208 2190 ntTSL 2 BASIC9.94□□□□□ -0.82
APOBP04114 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
APOBP04114 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
APOBP04114 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
APOBP04114 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
APOBP04114 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 HLA-DQB2-229ENST00000411527 1059 ntBASIC9.94□□□□□ -0.82
APOBP04114 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
APOBP04114 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC9.94□□□□□ -0.82
APOBP04114 AL592424.1-201ENST00000563624 1536 ntBASIC9.94□□□□□ -0.82
APOBP04114 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC9.93□□□□□ -0.82
APOBP04114 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 AC018635.2-201ENST00000608625 364 ntBASIC9.93□□□□□ -0.82
APOBP04114 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 NF2-208ENST00000403435 2568 ntTSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
APOBP04114 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC9.93□□□□□ -0.82
APOBP04114 AC145423.3-201ENST00000615987 467 ntBASIC9.93□□□□□ -0.82
APOBP04114 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
APOBP04114 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC9.93□□□□□ -0.82
APOBP04114 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC9.93□□□□□ -0.82
APOBP04114 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC9.92□□□□□ -0.82
APOBP04114 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC9.92□□□□□ -0.82
APOBP04114 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC9.92□□□□□ -0.82
APOBP04114 AC008267.1-201ENST00000474858 1069 ntBASIC9.92□□□□□ -0.82
APOBP04114 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC9.92□□□□□ -0.82
APOBP04114 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC9.92□□□□□ -0.82
APOBP04114 PAM16-215ENST00000577031 548 ntTSL 4 BASIC9.92□□□□□ -0.82
APOBP04114 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 AC244452.3-201ENST00000636814 210 ntBASIC9.92□□□□□ -0.82
APOBP04114 REXO1L1P-202ENST00000608646 1974 ntBASIC9.92□□□□□ -0.82
APOBP04114 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC9.92□□□□□ -0.82
APOBP04114 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
APOBP04114 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
APOBP04114 PARVG-202ENST00000415224 999 ntTSL 2 BASIC9.92□□□□□ -0.82
APOBP04114 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC9.92□□□□□ -0.82
APOBP04114 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC9.92□□□□□ -0.82
APOBP04114 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC9.92□□□□□ -0.82
APOBP04114 AC107373.2-201ENST00000607735 490 ntBASIC9.92□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms