Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 FAM8A3P-201ENST00000427218 844 ntBASIC19.37■□□□□ 0.69
MBD4O95243 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.37■□□□□ 0.69
MBD4O95243 AC004890.2-204ENST00000481968 304 ntBASIC19.37■□□□□ 0.69
MBD4O95243 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.37■□□□□ 0.69
MBD4O95243 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.37■□□□□ 0.69
MBD4O95243 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.37■□□□□ 0.69
MBD4O95243 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.37■□□□□ 0.69
MBD4O95243 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.37■□□□□ 0.69
MBD4O95243 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
MBD4O95243 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.37■□□□□ 0.69
MBD4O95243 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.37■□□□□ 0.69
MBD4O95243 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.37■□□□□ 0.69
MBD4O95243 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
MBD4O95243 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
MBD4O95243 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MBD4O95243 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
MBD4O95243 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
MBD4O95243 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 AC099398.1-201ENST00000567919 2776 ntBASIC19.36■□□□□ 0.69
MBD4O95243 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.36■□□□□ 0.69
MBD4O95243 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.36■□□□□ 0.69
MBD4O95243 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.36■□□□□ 0.69
MBD4O95243 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.36■□□□□ 0.69
MBD4O95243 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.36■□□□□ 0.69
MBD4O95243 AJ011932.1-201ENST00000621707 465 ntBASIC19.36■□□□□ 0.69
MBD4O95243 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.36■□□□□ 0.69
MBD4O95243 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
MBD4O95243 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
MBD4O95243 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
MBD4O95243 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MBD4O95243 CYP4F24P-201ENST00000586049 1580 ntBASIC19.36■□□□□ 0.69
MBD4O95243 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.35■□□□□ 0.69
MBD4O95243 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.35■□□□□ 0.69
MBD4O95243 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.35■□□□□ 0.69
MBD4O95243 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MBD4O95243 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.35■□□□□ 0.69
MBD4O95243 AC245100.5-201ENST00000452108 331 ntBASIC19.35■□□□□ 0.69
MBD4O95243 AL512638.1-201ENST00000457493 794 ntBASIC19.35■□□□□ 0.69
MBD4O95243 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC19.35■□□□□ 0.69
MBD4O95243 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 AL844908.2-201ENST00000609461 460 ntBASIC19.35■□□□□ 0.69
MBD4O95243 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MBD4O95243 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
MBD4O95243 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.35■□□□□ 0.69
MBD4O95243 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.35■□□□□ 0.69
MBD4O95243 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MBD4O95243 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
MBD4O95243 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms