Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 LINC00982-205ENST00000420957 435 ntBASIC17.68■□□□□ 0.42
RNF40O75150 AL645939.2-201ENST00000427340 991 ntBASIC17.68■□□□□ 0.42
RNF40O75150 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.68■□□□□ 0.42
RNF40O75150 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.68■□□□□ 0.42
RNF40O75150 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.68■□□□□ 0.42
RNF40O75150 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.68■□□□□ 0.42
RNF40O75150 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.68■□□□□ 0.42
RNF40O75150 OR7E47P-204ENST00000575924 449 ntBASIC17.68■□□□□ 0.42
RNF40O75150 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
RNF40O75150 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.68■□□□□ 0.42
RNF40O75150 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.68■□□□□ 0.42
RNF40O75150 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RNF40O75150 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF40O75150 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.67■□□□□ 0.42
RNF40O75150 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RNF40O75150 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.67■□□□□ 0.42
RNF40O75150 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.67■□□□□ 0.42
RNF40O75150 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.67■□□□□ 0.42
RNF40O75150 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.67■□□□□ 0.42
RNF40O75150 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.67■□□□□ 0.42
RNF40O75150 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 AC106028.4-201ENST00000614509 607 ntBASIC17.67■□□□□ 0.42
RNF40O75150 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RNF40O75150 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF40O75150 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF40O75150 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RNF40O75150 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.66■□□□□ 0.42
RNF40O75150 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
RNF40O75150 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF40O75150 AC025580.3-201ENST00000617932 1424 ntBASIC17.66■□□□□ 0.42
RNF40O75150 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.66■□□□□ 0.42
RNF40O75150 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.66■□□□□ 0.42
RNF40O75150 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms