Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
VMP1Q96GC9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.1
VMP1Q96GC9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VMP1Q96GC9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 MIR1233-2-201ENST00000408138 82 ntBASIC15.7■□□□□ 0.1
VMP1Q96GC9 MIR1233-1-201ENST00000408722 82 ntBASIC15.7■□□□□ 0.1
VMP1Q96GC9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 GPX1P2-201ENST00000429271 606 ntBASIC15.7■□□□□ 0.1
VMP1Q96GC9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
VMP1Q96GC9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VMP1Q96GC9 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VMP1Q96GC9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AL662844.4-201ENST00000606367 2838 ntBASIC15.69■□□□□ 0.1
VMP1Q96GC9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AC092053.1-201ENST00000605787 1936 ntBASIC15.69■□□□□ 0.1
VMP1Q96GC9 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 RPSAP43-201ENST00000402237 625 ntBASIC15.69■□□□□ 0.1
VMP1Q96GC9 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 C20orf181-201ENST00000623918 480 ntBASIC15.69■□□□□ 0.1
VMP1Q96GC9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.69■□□□□ 0.1
VMP1Q96GC9 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VMP1Q96GC9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 AC012569.1-201ENST00000591191 1524 ntBASIC15.68■□□□□ 0.1
VMP1Q96GC9 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms