Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHROOM3Q8TF72 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHROOM3Q8TF72 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 AC109322.1-201ENST00000524499 1264 ntBASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 AC005225.4-201ENST00000557330 545 ntBASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 AL513210.1-201ENST00000629608 234 ntBASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 AC138932.1-201ENST00000534164 6830 ntBASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
SHROOM3Q8TF72 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 LINC02447-202ENST00000501888 2146 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AF228730.6-201ENST00000641497 218 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AC084121.3-201ENST00000641716 218 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AC105233.6-201ENST00000642093 218 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AL365203.3-201ENST00000609742 2057 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 AL589702.1-201ENST00000641229 1509 ntBASIC16.58■□□□□ 0.24
SHROOM3Q8TF72 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AC112504.1-201ENST00000623415 1841 ntBASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 ALG1L8P-201ENST00000533887 760 ntBASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
SHROOM3Q8TF72 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.56■□□□□ 0.24
SHROOM3Q8TF72 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms