Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC087499.6-201ENST00000411576 835 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AL365330.1-201ENST00000607459 531 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AL109936.8-201ENST00000641772 604 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 CU639417.3-201ENST00000624240 1404 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC138969.3-201ENST00000546612 1459 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC138932.2-201ENST00000548268 1459 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC126755.4-201ENST00000549796 1459 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LMX1AQ8TE12 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.83■□□□□ 0.12
LMX1AQ8TE12 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 HLA-A-202ENST00000376806 1854 ntBASIC15.82■□□□□ 0.12
LMX1AQ8TE12 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 AC114501.2-201ENST00000439631 535 ntBASIC15.82■□□□□ 0.12
LMX1AQ8TE12 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 AC093004.1-201ENST00000508850 424 ntBASIC15.82■□□□□ 0.12
LMX1AQ8TE12 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 AC004461.2-201ENST00000629517 803 ntBASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1AQ8TE12 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 DGCR5-201ENST00000399539 862 ntBASIC15.81■□□□□ 0.12
LMX1AQ8TE12 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms