Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 GPX1P1-201ENST00000388829 606 ntBASIC10.14□□□□□ -0.79
LINC00643Q86TS7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AL355355.2-201ENST00000442321 338 ntBASIC10.14□□□□□ -0.79
LINC00643Q86TS7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AC007322.4-201ENST00000509611 723 ntBASIC10.14□□□□□ -0.79
LINC00643Q86TS7 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 LINC00895-201ENST00000629028 1637 ntBASIC10.14□□□□□ -0.79
LINC00643Q86TS7 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 AC011474.4-201ENST00000623523 2076 ntBASIC10.13□□□□□ -0.79
LINC00643Q86TS7 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 TESC-206ENST00000541210 936 ntTSL 3 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PNN-205ENST00000556530 601 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 AC005829.2-201ENST00000571422 1056 ntBASIC10.13□□□□□ -0.79
LINC00643Q86TS7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC10.13□□□□□ -0.79
LINC00643Q86TS7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 MPI-203ENST00000535694 1523 ntTSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
LINC00643Q86TS7 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms