Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATL3Q6DD88 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
ATL3Q6DD88 TMBIM7P-203ENST00000641617 1718 ntBASIC18.6■□□□□ 0.57
ATL3Q6DD88 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 AC006058.4-201ENST00000624016 1670 ntBASIC18.59■□□□□ 0.57
ATL3Q6DD88 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ATL3Q6DD88 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATL3Q6DD88 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATL3Q6DD88 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATL3Q6DD88 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.58■□□□□ 0.57
ATL3Q6DD88 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATL3Q6DD88 PMS2P7-201ENST00000506558 1336 ntBASIC18.58■□□□□ 0.57
ATL3Q6DD88 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
ATL3Q6DD88 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 GPX1P2-201ENST00000429271 606 ntBASIC18.58■□□□□ 0.56
ATL3Q6DD88 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 AP001005.1-201ENST00000571755 1248 ntBASIC18.58■□□□□ 0.56
ATL3Q6DD88 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 AL161645.1-201ENST00000622716 1255 ntBASIC18.58■□□□□ 0.56
ATL3Q6DD88 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ATL3Q6DD88 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.58■□□□□ 0.56
ATL3Q6DD88 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
ATL3Q6DD88 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms