Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VCPP55072 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.49■□□□□ 0.39
VCPP55072 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 SPCS2P4-201ENST00000436160 681 ntBASIC17.49■□□□□ 0.39
VCPP55072 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.49■□□□□ 0.39
VCPP55072 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.49■□□□□ 0.39
VCPP55072 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.49■□□□□ 0.39
VCPP55072 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.49■□□□□ 0.39
VCPP55072 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.49■□□□□ 0.39
VCPP55072 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VCPP55072 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VCPP55072 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VCPP55072 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VCPP55072 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
VCPP55072 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 SPDYE7P-202ENST00000420373 878 ntBASIC17.48■□□□□ 0.39
VCPP55072 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 AC140658.5-201ENST00000438532 169 ntBASIC17.48■□□□□ 0.39
VCPP55072 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.48■□□□□ 0.39
VCPP55072 AC009118.2-201ENST00000613275 655 ntBASIC17.48■□□□□ 0.39
VCPP55072 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.48■□□□□ 0.39
VCPP55072 ALOX12P2-203ENST00000570921 1945 ntBASIC17.48■□□□□ 0.39
VCPP55072 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 AC006538.1-201ENST00000567905 1585 ntBASIC17.48■□□□□ 0.39
VCPP55072 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VCPP55072 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.48■□□□□ 0.39
VCPP55072 AL391005.1-201ENST00000623953 2435 ntBASIC17.48■□□□□ 0.39
VCPP55072 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCPP55072 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VCPP55072 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
VCPP55072 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.47■□□□□ 0.39
VCPP55072 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.47■□□□□ 0.39
VCPP55072 AC004233.3-201ENST00000607794 1269 ntBASIC17.47■□□□□ 0.39
VCPP55072 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.47■□□□□ 0.39
VCPP55072 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms