Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP2AO43633 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CHMP2AO43633 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CHMP2AO43633 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CHMP2AO43633 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP2AO43633 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP2AO43633 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP2AO43633 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP2AO43633 REXO1L8P-201ENST00000604378 1897 ntBASIC18.35■□□□□ 0.53
CHMP2AO43633 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.35■□□□□ 0.53
CHMP2AO43633 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP2AO43633 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CHMP2AO43633 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CHMP2AO43633 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.34■□□□□ 0.53
CHMP2AO43633 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.34■□□□□ 0.53
CHMP2AO43633 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.34■□□□□ 0.53
CHMP2AO43633 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CHMP2AO43633 AC051619.7-201ENST00000568314 623 ntBASIC18.34■□□□□ 0.53
CHMP2AO43633 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.34■□□□□ 0.53
CHMP2AO43633 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.34■□□□□ 0.53
CHMP2AO43633 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.34■□□□□ 0.53
CHMP2AO43633 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CHMP2AO43633 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHMP2AO43633 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
CHMP2AO43633 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.33■□□□□ 0.53
CHMP2AO43633 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.33■□□□□ 0.53
CHMP2AO43633 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.53
CHMP2AO43633 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CHMP2AO43633 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
CHMP2AO43633 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.33■□□□□ 0.53
CHMP2AO43633 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHMP2AO43633 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.33■□□□□ 0.52
CHMP2AO43633 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.33■□□□□ 0.52
CHMP2AO43633 MIR943-201ENST00000401286 94 ntBASIC18.33■□□□□ 0.52
CHMP2AO43633 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 AC107890.1-201ENST00000422478 521 ntBASIC18.33■□□□□ 0.52
CHMP2AO43633 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.33■□□□□ 0.52
CHMP2AO43633 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 AC015911.4-201ENST00000588022 1070 ntBASIC18.33■□□□□ 0.52
CHMP2AO43633 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.33■□□□□ 0.52
CHMP2AO43633 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHMP2AO43633 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.33■□□□□ 0.52
CHMP2AO43633 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP2AO43633 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP2AO43633 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.32■□□□□ 0.52
CHMP2AO43633 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP2AO43633 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP2AO43633 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP2AO43633 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms