Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NAPSB-206ENST00000562112 1266 ntBASIC13.22□□□□□ -0.29
HMGB3O15347 STK25P1-201ENST00000585406 838 ntBASIC13.22□□□□□ -0.29
HMGB3O15347 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.22□□□□□ -0.29
HMGB3O15347 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC13.22□□□□□ -0.29
HMGB3O15347 AC010947.1-201ENST00000623454 693 ntBASIC13.22□□□□□ -0.29
HMGB3O15347 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 AC005695.1-201ENST00000574307 5672 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 RNF150-206ENST00000515673 9805 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.22□□□□□ -0.29
HMGB3O15347 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 ST20-AS1-201ENST00000560255 4223 ntBASIC13.21□□□□□ -0.29
HMGB3O15347 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
HMGB3O15347 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.21□□□□□ -0.29
HMGB3O15347 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC13.21□□□□□ -0.29
HMGB3O15347 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HMGB3O15347 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HMGB3O15347 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC13.21□□□□□ -0.29
HMGB3O15347 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 AL355075.4-201ENST00000554988 638 ntBASIC13.21□□□□□ -0.29
HMGB3O15347 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
HMGB3O15347 GPR32P1-201ENST00000601788 811 ntBASIC13.21□□□□□ -0.29
HMGB3O15347 GLDC-219ENST00000640208 420 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.21□□□□□ -0.29
HMGB3O15347 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HMGB3O15347 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
HMGB3O15347 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.21□□□□□ -0.3
HMGB3O15347 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
HMGB3O15347 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HMGB3O15347 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HMGB3O15347 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
HMGB3O15347 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 HLA-F-220ENST00000434407 884 ntBASIC13.2□□□□□ -0.3
HMGB3O15347 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 HLA-J-202ENST00000469281 1241 ntBASIC13.2□□□□□ -0.3
HMGB3O15347 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.2□□□□□ -0.3
HMGB3O15347 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.2□□□□□ -0.3
HMGB3O15347 AC073912.3-201ENST00000624414 853 ntBASIC13.2□□□□□ -0.3
HMGB3O15347 AC141257.4-201ENST00000634557 245 ntBASIC13.2□□□□□ -0.3
HMGB3O15347 AC136944.6-201ENST00000634818 245 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms