Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 MIR1199-201ENST00000621445 119 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 AC129492.6-201ENST00000611383 1305 ntBASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 MIR600HG-201ENST00000449175 5984 ntBASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 AF186996.4-201ENST00000467186 377 ntBASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 AC092910.1-201ENST00000482027 1129 ntBASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 AC005412.3-201ENST00000580309 715 ntBASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM56Q9BRZ2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 AP000347.1-202ENST00000435868 847 ntBASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SLC25A6P4-201ENST00000586535 553 ntBASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms