Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PTCHD1Q96NR3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AL139400.1-201ENST00000366220 510 ntBASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 HLA-J-203ENST00000494367 1087 ntBASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 SPTSSB-204ENST00000617024 1292 ntBASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC092364.2-201ENST00000596710 2692 ntBASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC005622.1-201ENST00000636801 1703 ntBASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTCHD1Q96NR3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC018695.7-201ENST00000624587 2492 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 PMS2P2-201ENST00000425039 1128 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC142381.1-201ENST00000426099 345 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC093724.1-201ENST00000448659 1027 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC109322.1-201ENST00000524499 1264 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC025678.2-201ENST00000562061 970 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms